PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G15410.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 420aa MW: 45139.6 Da PI: 4.7613

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G15410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.8e-20	158	211	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k OGLUM08G15410.1 158 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 211 56789************************************************9 PP
2	HD-ZIP_I/II	132.4	1.7e-42	157	248	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal++++++L +++++Lr+++ OGLUM08G15410.1 157 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVI 248 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MGFSLYPMKT STRMLWSTSF FRHKPTPSRA AAASRRRSAR LVGARACVNG RAASRSGFLG 60 FLEKGGEEGE ESMDPGRVVF DSGVARRACP GGAQMLLFGG GGSANSGGFF RGVPAAVLGM 120 DESRSSSSAA GAGAKRPFFT THEELLEEEY YDEQAPEKKR RLTAEQVQML ERSFEEENKL 180 EPERKTELAR RLGMAPRQVA VWFQNRRARW KTKQLEHDFD RLKAAYDALA ADHHALLSDN 240 DRLRAQVISL TEKLQDKETS PSSATITTAA QEVDQPDEHT EAASTTGFAT VDGALAAPPP 300 GHQQPPHKDD LVSSGGTNDD GDGGGAAVVV FDVTEGANDR LSCESAYFAD AAEAYERDCA 360 GHYALSSEEE DGGAVSDEGC SFDLPDAAAA AMFSAAGVVH HDAAADEEAQ LGSWTAWFWS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MGFSLYPMKT STRMLWSTSF FRHKPTPSRA AAASRRRSAR LVGARACVNG RAASRSGFLG  60
FLEKGGEEGE ESMDPGRVVF DSGVARRACP GGAQMLLFGG GGSANSGGFF RGVPAAVLGM  120
DESRSSSSAA GAGAKRPFFT THEELLEEEY YDEQAPEKKR RLTAEQVQML ERSFEEENKL  180
EPERKTELAR RLGMAPRQVA VWFQNRRARW KTKQLEHDFD RLKAAYDALA ADHHALLSDN  240
DRLRAQVISL TEKLQDKETS PSSATITTAA QEVDQPDEHT EAASTTGFAT VDGALAAPPP  300
GHQQPPHKDD LVSSGGTNDD GDGGGAAVVV FDVTEGANDR LSCESAYFAD AAEAYERDCA  360
GHYALSSEEE DGGAVSDEGC SFDLPDAAAA AMFSAAGVVH HDAAADEEAQ LGSWTAWFWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	214	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-44	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G15410.1