PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G10180.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 522aa    MW: 57708.5 Da    PI: 9.1687
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G10180.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-19115170257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk
  OGLUM08G10180.4 115 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 170
                      5677899************************************************8 PP
2START70.25.8e-233215097164
                      HHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
            START   7 aqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                      ++e++ k +++ p+W         es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ is
  OGLUM08G10180.4 321 ENESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIS 412
                      5666777788999999888899999********999553.3589999**************************.******99999********* PP

                      TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCE CS
            START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksngh 161
                      +g      g lqlm aelq++sp vp  d++f+R++ q g g w +vd S+d   + ++         ss  +R   ++llpSg++ie+++ng+
  OGLUM08G10180.4 413 TGlsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDASIDTILPGESktaqsivqtSSTAARrmeVRLLPSGCVIEEMENGY 506
                      ***************************************************98777766653333443222223455899************** PP

                      EEE CS
            START 162 skv 164
                      skv
  OGLUM08G10180.4 507 SKV 509
                      **9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    
MGRPVAPRLG SPLSSPAAAH AAAGAPAPSR AARWGRGSPR PCAVLAIPLV EVMDGELKLM  60
ASYVSKLKFI LQKDQQQEPH TANLLVLLGS SNQDKRNGLS QGENRMDTCT RKKPRRYQLL  120
TMQQKETLNR AFQSCPNPDR NDLKKLAKEL NMTETQIKYW FQNCRTKMKK FKNNEERKLL  180
QKENEELKKE NAELRNRMKN STCRACDLPL FHIDCRHWEN PMLNKGNHGV TSNLIPQAVS  240
SLLPSSSGFV ASGSNLSSNA VLMPVSAMPS SVLQPAPAVS GANFPILHNL SANANDGYTE  300
KNVLLDLANR AMEEFFSLMK ENESLVKKKE NGPLWLPHMD ILGVESLNYQ EYLAKSRTIG  360
QKPVDFKVVV TRDTAIVNGS CVDLVKSLLD ANRWRELFPG IVASANTTKI ISTGLSNLHD  420
GLLQLMRAEL QVMSPEVPVC DVTFLRQSVQ FGSGLWCVVD ASIDTILPGE SKTAQSIVQT  480
SSTAARRMEV RLLPSGCVIE EMENGYSKVL CFLIDSITGT RC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112148KKPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.21e-47HD-ZIP family protein