PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G10180.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 783aa MW: 86350.8 Da PI: 8.3382 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 63 | 118 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk OGLUM08G10180.2 63 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 118 6677899************************************************8 PP | |||||||
2 | START | 104.8 | 1.5e-33 | 269 | 497 | 7 | 204 |
HHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 7 aqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ++e++ k +++ p+W es+n++e+l k + + +++ + r++++v + +++lv++lld + +W e ++ +a t++ is OGLUM08G10180.2 269 ENESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIS 360 5666777788899999888899999********999553.3589999**************************.******99999********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCE CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksngh 161 +g g lqlm aelq++sp vp d++f+R++ q g g w +vd S+d + ++ ss +R ++llpSg++ie+++ng+ OGLUM08G10180.2 361 TGlsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDASIDTILPGESktaqsivqtSSTAARrmeVRLLPSGCVIEEMENGY 454 ***************************************************98777766653333443222223455899************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 sk+tw+ h+ +++r ++ l++sl++s a ga +wva lqr+ OGLUM08G10180.2 455 SKLTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 497 *****************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence |
MDGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK 60 KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK 120 NNEERKLLQK ENEELKKENA ELRNRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS 180 NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA 240 NANDGYTEKN VLLDLANRAM EEFFSLMKEN ESLVKKKENG PLWLPHMDIL GVESLNYQEY 300 LAKSRTIGQK PVDFKVVVTR DTAIVNGSCV DLVKSLLDAN RWRELFPGIV ASANTTKIIS 360 TGLSNLHDGL LQLMRAELQV MSPEVPVCDV TFLRQSVQFG SGLWCVVDAS IDTILPGESK 420 TAQSIVQTSS TAARRMEVRL LPSGCVIEEM ENGYSKLTWM VHAAYDERAV PVLYHSLLRS 480 AKALGACRWV ASLQRHSQFL SGLHKYIFCP DSTKVVMRRK VLYLVKQMTS SFTGLFASMS 540 KATLQDGDDT HFAHQIVGGA TGEPAGLLLS ATTTIWLPGV NPRRVYDHLR DEQCHGEWRC 600 LLGEQLHQGN ALPYGAPLNG ETVPEFYRMV NGLHEGHAIS LISPREMGGN ISNTLLLQEA 660 RTDLSGSLIV YARTDVNTVH SIMNSGLNPA TVFLVSSGCA ILPDCLESFP LHPAATADQA 720 GTSSAAIASR SETGGSFVTV TYQMFFSSQG GAAPASSSIH QGRDALKKAT DIFKVVLDTL 780 TVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 96 | KKPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 9e-92 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G10180.2 |