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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OGLUM08G06520.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 249aa MW: 28233.8 Da PI: 4.5635 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 152.8 | 6.3e-48 | 78 | 181 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91
ql++fw++q +e++t+fk +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifdf
OGLUM08G06520.1 78 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDF 171
89******9777799******************************************************************************* PP
NF-YC 92 lvdivprdel 101
lvdi+ d++
OGLUM08G06520.1 172 LVDIITDDKM 181
*****99876 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 249 aa Download sequence |
MDPHSHKKAH EGLIGDNPDA YAVTTYQPVL MVEPSAAAAF PPAPQVAPAY PVNPMQLPEH 60 QQHAIQQVQQ LQQQQKEQLQ AFWADQMAEV EQMTEFKLPN LPLARIKKIM KADEDVKMIA 120 GEAPALFAKA CEMFILDMTL RSWQHTEEGR RRTLQRSDVE AVIKKTDIFD FLVDIITDDK 180 MKDDGMGSQA ASMVSPYTSG GMGFSFDLYP NQHHLAYMWP PQEQQEQWPP QEQQEQKQKQ 240 DSDGGGQDE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 151 | 157 | RRTLQRS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G56170.1 | 4e-51 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM08G06520.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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