PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G05340.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 744aa    MW: 79638.8 Da    PI: 5.3929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G05340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.32e-11109149141
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  OGLUM08G05340.1 109 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 149
                      688999*********************************86 PP
2START209.81.1e-652905111206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                      ela +a++elv++a+++ p+W++ss      +++++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a+
  OGLUM08G05340.1 290 ELAVAAMDELVQMAQLDGPLWSSSSsgpaaMMLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRAS 382
                      57899************************99***********998889*******************************.88888888888*** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                      t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwv
  OGLUM08G05340.1 383 THEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWV 472
                      **************************************************************98....7************************* PP

                      E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ehv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  OGLUM08G05340.1 473 EHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 511
                      *************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    
MTPARRMPPV IGRNGVAYGS PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTAAAAAA  60
DSGDNMLHGR ADAGGLVDEF ESKSCSENVD GAGDGLSGDD QDPNQRPRKK RYHRHTQHQI  120
QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QNQHERHENA QLRAENDKLR AENMRYKEAL  180
SSASCPNCGG PAALGEMSFD EHHLRVENAR LRDEIDRISG IAAKHVGKPP IVSFPVLSSP  240
LAAAAARSPL DLAGAYGVVT PGLDMFAGAG AGDLLRGVHP LDADKPMIVE LAVAAMDELV  300
QMAQLDGPLW SSSSSGPAAM MLDEEEYARM FPRGLGPKQY GLKSEASRHG AVVIMTHSNL  360
VEILMDVNQF ATVFSSIVSR ASTHEVLSTG VAGNYNGALQ VMSMEFQVPS PLVPTRESYF  420
VRYCKNNSDG TWAVVDVSLD SLRPSPVLKC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDS  480
SVHNIYKPLV NSGLAFGAKR WVGTLDRQCE RLASAMASNI PNGDLGVITS VEGRKSMLKL  540
AERMVASFCG GVTASVAHQW TTLSGSGAED VRVMTRKSVD DPGRPPGIVL NAATSFWLPV  600
PPAAVFDFLR DETSRSESAN SNQSNMLILQ ESCTDASGSY VVYAPVDIVA MNVVLNGGDP  660
DYVALLPSGF AILPDGPSGN AQAAVGENGS GSGGGSLLTV AFQILVDSVP TAKLSLGSVA  720
TVNSLIACTV ERIKAAVCRD SNPQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein