PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G05080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 506aa MW: 51537 Da PI: 6.9949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G05080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00059	403	431	21	54
HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 L++l+ + +K + a++L +++eYIk L OGLUM08G05080.1 403 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 431 5566666665.....89***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF 60 GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG GVADPAAIAV 120 HAQTVAAGGG GGGVADPAAI AVHAQTVAAG GGGGGWNQQP FLDGSGFHGY MSSSRNDHHT 180 NHHHHQINTP SLMSNSSSNN GVMLQEHQHD QNYQFLSNLG FELLSSPTSP YGGGGGFRSS 240 LLRSLTEPAA AAKPNDSPGF QQYHHHQPAM NLQPPAAAAG REPLQFTNST AAPFWNPSSG 300 FTVAAEGTAL GGAGASPAQP TPASLAAKRA LEGVGDSSSI ITKKAKADST PLKKSRTGTP 360 SPLPTTFKAC VYIYIIFNLS QMMIDFLPIK FHVRKEKLGD RVTALQQLVS PFGKTDTASV 420 LHETIEYIKF LHDQVGALSA PYLKNRQQVP HLKNSTGVDN DGGEATAASK RDLTGRGLCL 480 VPISSTFAVA SETPVDFWTP FGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG GVADPAAIAV  120
HAQTVAAGGG GGGVADPAAI AVHAQTVAAG GGGGGWNQQP FLDGSGFHGY MSSSRNDHHT  180
NHHHHQINTP SLMSNSSSNN GVMLQEHQHD QNYQFLSNLG FELLSSPTSP YGGGGGFRSS  240
LLRSLTEPAA AAKPNDSPGF QQYHHHQPAM NLQPPAAAAG REPLQFTNST AAPFWNPSSG  300
FTVAAEGTAL GGAGASPAQP TPASLAAKRA LEGVGDSSSI ITKKAKADST PLKKSRTGTP  360
SPLPTTFKAC VYIYIIFNLS QMMIDFLPIK FHVRKEKLGD RVTALQQLVS PFGKTDTASV  420
LHETIEYIKF LHDQVGALSA PYLKNRQQVP HLKNSTGVDN DGGEATAASK RDLTGRGLCL  480
VPISSTFAVA SETPVDFWTP FGAAFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	3e-39	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G05080.1