PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G04800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 284aa MW: 28144.9 Da PI: 6.4154

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G04800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.1	1.6e-55	57	152	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianvsrimk+ lPanakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe yv plk yl++yre+eg OGLUM08G04800.1 57 KEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEG 150 89*******************************************************************************************9 PP NF-YB 96 ek 97 ek OGLUM08G04800.1 151 EK 152 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MKSRKSYGHL LSPVGSPPSD NESGAAAAAA AAGGGGCGSS AGYVVYGGGG GGDSPAKEQD 60 RFLPIANVSR IMKRSLPANA KISKEAKETV QECVSEFISF VTGEASDKCQ REKRKTINGD 120 DLLWAMTTLG FEAYVGPLKS YLNRYREAEG EKAAVLGGAA AARHGEGGCC GGGGGADGVV 180 IDGHSPLAGG LSHSHHGHQQ QDGGGDVGLM MGGGAAGVGY NAGAGSTTTA FYAPAATAAS 240 GNKAYCGGDG SRVMEFEGIG GEESGGGGGG GERGFAGHLH GVQW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-56	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G04800.1