PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G04530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 274aa MW: 29611.9 Da PI: 6.6917 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.4e-11 | 78 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g OGLUM08G04530.1 78 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 134 79*******************55558777778888.999999**************98 PP | |||||||
2 | AP2 | 50.1 | 6.7e-16 | 179 | 233 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g+ OGLUM08G04530.1 179 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 233 67*****999.9******99953323..36**********99*************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence |
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG 60 GGKLVAETMR KYAAPRSSRY HGVTRLKWSG KFEAHLWDNT SQVEGRKRKG KHGSYVTEEN 120 AARAHDLAAL KYWGAGPNTK LNFNVSDYEK EIERMKTMSQ DEFVVYIRRQ SSCFSRGTSS 180 YRGVTRRKDG RWQARIGRIG ESRDTKDIYL GTFETEIEAA EAYDLAAIEL RGAHAVTNFD 240 ISNYCEDGLK KLEASSEVPK LLEGPSKAAK LAGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 4e-66 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G04530.1 |