PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G03690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 215aa MW: 22474.5 Da PI: 7.9433 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.3 | 5.9e-14 | 99 | 123 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV OGLUM08G03690.1 99 CSGCRNLLMYPAGATSVCCAVCSTV 123 ***********************99 PP | |||||||
2 | zf-LSD1 | 46 | 8.6e-15 | 138 | 162 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OGLUM08G03690.1 138 CGGCHTLLMYIRGATSVQCSCCHTV 162 ************************9 PP | |||||||
3 | zf-LSD1 | 41.1 | 3e-13 | 176 | 200 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V OGLUM08G03690.1 176 CGNCRMLLMYQYGARSVKCAVCNFV 200 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MTSVKCTIPI PMLLMDYILS QAVVLVQKIL LLHLSAGFLS CRERKGDFSC LTAARICEAS 60 TSDAVIQAAG TAMPVPLAPY PTPPVPFTPP NGAQSQLVCS GCRNLLMYPA GATSVCCAVC 120 STVTAVPAPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR 180 MLLMYQYGAR SVKCAVCNFV TSVGASPGTD QKPSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-60 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G03690.1 |