PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 325aa    MW: 33644.5 Da    PI: 7.0644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07263306243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  OGLUM08G03650.1 263 GSWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 306
                      79********************************.*******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MEFIDDDWDY QPRARVIHSR ASANASTSTT TSSAQPSRSL PHAAACAAAA VALLAAAYYL  60
LLPDYQVLAS VAVWVASSLL LAPFAPSSAT GGDVSVGRGD PLPEQEPVEE PVSDPAPTSR  120
RGRRHSSSSN PTPPPPKPSD PIAPPPPRHA AAAAAAAATA VADGGEAVED AGEWTDQEMD  180
ILRRQMVKHP AGEPQRWEKI AAAFGGRRTP ESVIRAAKSG GGAAAAGASF DQFLRKRKPL  240
DPRAEAADAG GGNAGGGGES GDGSWSAGDD RALLNALKEF PKDTAMRWEK VAAAVPGKTK  300
AACMKRVTEL KRDFRSSKAA SEAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239LRKRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-41MYB_related family protein