PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G00080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 315aa MW: 34595 Da PI: 7.5227

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G00080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.5	4.8e-13	208	292	3	83
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 k+lt+sdv++ gr+vlpkk ae+ + ++ + l + d +W++k++y ++ks++y+l eF k +gL++gD+++++ OGLUM08G00080.1 208 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMDD--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 292 899****************9998844445565566666..3446*****777777777777.99*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PLPNPFPAPS SGFADWSAST SAFTSLAAHS 60 STAPSNAVHY SFSPCYAFWT HYMLNKNAYP TSFPAPHDDH LRLANNNHPR DAPGPASSYG 120 VESFTSPSMA PNICTHMPPI EGPISAKEDK KPEILPRVVK SSDELETRNS NVEFHSETVG 180 TLPESKQGHD SRATKLLNSG EYQVILRKEL TKSDVGNVGR IVLPKKDAEA SLPPLLQRDP 240 LILHMDDMVL PVTWKFKYRY WPNNKSRMYI LDSAGEFLKT HGLQAGDVII IYKNLAPGKF 300 IIRGEKAIHQ QTTNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	9e-35	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G00080.1