PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G23940.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 313aa    MW: 34597.9 Da    PI: 7.0412
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G23940.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35391312103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll 
  OGLUM07G23940.1  39 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLA 123
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  OGLUM07G23940.1 124 EIHRRKSS 131
                      *****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MAFLVERCGE MVVSMEMGPH GGVGGGGGAA AGKPVPAPFL TKTYQLVDDP CTDHIVSWGE  60
DDTTFVVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVADRWEFA NEFFRKGAKH  120
LLAEIHRRKS SQPPPPPMPH QPYHHHHLNP FSLPPPPPAY HHHHLIQEEP ATTAHCTVAG  180
DGGEGGDFLA ALSEDNRQLR RRNSLLLSEL AHMKKLYNDI IYFLQNHVAP VTTTTTTPSS  240
TAMAAAQHHL PAAASCRLME LDSPDHSPPP PPPKTPATDG GDTVKLFGVS LHGRKKRAHR  300
DEDDGVHDQG SEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.18e-69HSF family protein