PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G20940.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 416aa MW: 43901.7 Da PI: 6.9812

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G20940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.1	3.6e-06	92	112	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk Fs++ +L H+r+H OGLUM07G20940.1 92 CRECGKLFSSWRSLFGHMRRH 112 ********************9 PP
2	zf-C2H2	14.5	0.00011	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cgk+F + L H +H OGLUM07G20940.1 292 YECPGCGKVFASYQALGGHRASH 314 99**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MDAGGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAAELGANGG VVGYGLRENP 60 KKTRRLSEFD GDGDGEEVEV EEGGDGGELR ACRECGKLFS SWRSLFGHMR RHASGGGGRD 120 HDDDDDDDVD VEDEFGGGEE EEIVAPAPAA VTVIAAPPRR RRRSMRVAAP APAPPLPVLL 180 GGFEKEQEDV ALGLLMLSRD TGVWRSPVKA ETFEKPEQKK KKATAKQPPP LPLPRNGYGY 240 GYNSDEDSAL LQYGGDVAKS RKRRASYHSP NSISSKKKQQ PRAAAPAKRT RYECPGCGKV 300 FASYQALGGH RASHKRINTS CSAPKVSPAT AAAAAPAPEP SSETYASLST LSPSASPGSA 360 AAGIGDRKAN NKSSAEEEKF GGACSSDELY AELELEQRSP AAAAGFLDLN FPPASS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MDAGGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAAELGANGG VVGYGLRENP  60
KKTRRLSEFD GDGDGEEVEV EEGGDGGELR ACRECGKLFS SWRSLFGHMR RHASGGGGRD  120
HDDDDDDDVD VEDEFGGGEE EEIVAPAPAA VTVIAAPPRR RRRSMRVAAP APAPPLPVLL  180
GGFEKEQEDV ALGLLMLSRD TGVWRSPVKA ETFEKPEQKK KKATAKQPPP LPLPRNGYGY  240
GYNSDEDSAL LQYGGDVAKS RKRRASYHSP NSISSKKKQQ PRAAAPAKRT RYECPGCGKV  300
FASYQALGGH RASHKRINTS CSAPKVSPAT AAAAAPAPEP SSETYASLST LSPSASPGSA  360
AAGIGDRKAN NKSSAEEEKF GGACSSDELY AELELEQRSP AAAAGFLDLN FPPASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-12	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G20940.1