PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G05050.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 334aa MW: 36763.7 Da PI: 8.6797

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G05050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.2	3.5e-19	109	208	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+l+ sdv++ l+lp + a++ +++ + + l ++d++g +W++++ + ++gr++lt+GW eFv a++L gD+vvF+ +r OGLUM07G05050.1 109 FEKQLSLSDVFA---LTLPESGANDVlpplqrNLNAADQPLLFIKDLRGVRWKFRHVLSDHDGRHLLTTGWGEFVVAKRLVYGDSVVFM--RRP 197 889999999997...57999999888999999777777779**********************************************..679 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++v+r+ OGLUM07G05050.1 198 DGELLLGVRRR 208 *******97 PP
2	Auxin_resp	37.8	8.4e-14	235	295	9	68
Auxin_resp 9 svFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsd 68 +F+v+Y+Pr+st eFvv++e v ++ +++G +++ ++ +d ++r+ Gtv++ OGLUM07G05050.1 235 LPFDVTYYPRVSTDEFVVRREVVDASP-AAFAPGVPVRLLMNPDDTRRRTEmvFGTVRADDS 295 69***************99888777.99**************9998655777765444 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MEVQPPVVDC DVWFACAAPY SGRLPAVGSR VYYFPHGHAE QCGVPLTPQF PYRHCFPCTV 60 TQLVVSVDGA DEIHATISLQ PGDRDDVPHR RAVPAGCSPG PDQREFCFFE KQLSLSDVFA 120 LTLPESGAND VLPPLQRNLN AADQPLLFIK DLRGVRWKFR HVLSDHDGRH LLTTGWGEFV 180 VAKRLVYGDS VVFMRRPDGE LLLGVRRRGP DGSHPGPESS HATTAARLAS RRWSLPFDVT 240 YYPRVSTDEF VVRREVVDAS PAAFAPGVPV RLLMNPDDTR RRTEMVFGTV RADDSLRAWR 300 KLELAKRARG SGGGRSTATA GAGGLAIAST RPSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	5e-38	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G05050.1