PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G04880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 407aa MW: 44528.6 Da PI: 4.763

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G04880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.9	3.7e-13	125	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ld.g 86 f+k+l+ sd + r++ p a+ + k ++ l ++d++g +++ + +k++r++l+k Wk+F ++ + +gD+v+F+ +d g OGLUM07G04880.1 125 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLQGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDdG 214 899******************8889986666676..999**********..***************************664534 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++++el+v+v+r+ OGLUM07G04880.1 215 DDDGELYVGVRRQ 227 599*****997 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MAALPPPPLA DDGDGIVDRA MWLACAAPNS GRLPAVGSVV FYFVDGHAAQ FCQFPAPLLE 60 QLAVPGPRVF LCTVAGVRLR ADALTNEAYA DITLDPVADN DVPHLAPAPA PAPAAAAGGQ 120 QLRYFVKTLM ISDFDFRIRF SAPMADAKGV FPPLVDAKAV QPLLVKDLQG SPMTFDYGRK 180 GKRVTLAKVW KKFRDDMDFV DGDSVIFMRR RDDGDDDGEL YVGVRRQRTL ERPLRNTMRR 240 SRSPTPPQAA VQEAVLAAAG QAAAGERFRV AYRSRQDGDE FVVPREAVDE GLRARLTSLV 300 EVEFVWAVED GAPPIVGPRG KVTAIATGQL WRNLEIVWDG NSEMDMSANF WQVRPVEEVD 360 ISPSTPPKRL KNCEIDDTAS SSVSVDNGDE QVPTMRQRLE ALFPDNI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MAALPPPPLA DDGDGIVDRA MWLACAAPNS GRLPAVGSVV FYFVDGHAAQ FCQFPAPLLE  60
QLAVPGPRVF LCTVAGVRLR ADALTNEAYA DITLDPVADN DVPHLAPAPA PAPAAAAGGQ  120
QLRYFVKTLM ISDFDFRIRF SAPMADAKGV FPPLVDAKAV QPLLVKDLQG SPMTFDYGRK  180
GKRVTLAKVW KKFRDDMDFV DGDSVIFMRR RDDGDDDGEL YVGVRRQRTL ERPLRNTMRR  240
SRSPTPPQAA VQEAVLAAAG QAAAGERFRV AYRSRQDGDE FVVPREAVDE GLRARLTSLV  300
EVEFVWAVED GAPPIVGPRG KVTAIATGQL WRNLEIVWDG NSEMDMSANF WQVRPVEEVD  360
ISPSTPPKRL KNCEIDDTAS SSVSVDNGDE QVPTMRQRLE ALFPDNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	9e-27	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G04880.1