PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G02040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 510aa MW: 54998.9 Da PI: 4.8191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G02040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	356	374	37	55
-STCHHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksLq 55 +Ka+iL +A+eY+ksLq OGLUM07G02040.1 356 QTDKASILDEAIEYLKSLQ 374 479***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MPPRSTQEDV GVREERMTPA CGGRVKCDLP AVEELRLHGC GCNCKVVVVV GDDDEPEEAL 60 AVIKIFRFLF FSFLFDLVFC VAMVLDRCKD WRILFCLLAW RSSDGELVEL LWQDGGVVAH 120 AQTRHRSPGL LARSGVTGEE ETASAWFADG GGGDDALGVG MGRDIYSQLW HSFANVDGHA 180 AGALALATPT PRAAARSDDV LSRLDEAGLS ICGSNAVAAP ALPADDDDDA APREEEEEEV 240 EEGTGAARAA GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA 300 AEVHNLSERV RPQEHQPTID GYMVLHHLQQ EKKGSHQRKV ESIARTGASL QQAVSQTDKA 360 SILDEAIEYL KSLQMQVQIM WMTTGIAPMM FPGAHQLMPP MGMGLNTACM PGAQGLNQLQ 420 RTTHYMNNSL PNQMPQIPSP VMSAPNVPND MQSDNRIRGP RNPFLHCNDT LTATAQVPGF 480 PYGSQIAEQN EIQELLSGAV IPSSSDGTIK

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MPPRSTQEDV GVREERMTPA CGGRVKCDLP AVEELRLHGC GCNCKVVVVV GDDDEPEEAL  60
AVIKIFRFLF FSFLFDLVFC VAMVLDRCKD WRILFCLLAW RSSDGELVEL LWQDGGVVAH  120
AQTRHRSPGL LARSGVTGEE ETASAWFADG GGGDDALGVG MGRDIYSQLW HSFANVDGHA  180
AGALALATPT PRAAARSDDV LSRLDEAGLS ICGSNAVAAP ALPADDDDDA APREEEEEEV  240
EEGTGAARAA GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA  300
AEVHNLSERV RPQEHQPTID GYMVLHHLQQ EKKGSHQRKV ESIARTGASL QQAVSQTDKA  360
SILDEAIEYL KSLQMQVQIM WMTTGIAPMM FPGAHQLMPP MGMGLNTACM PGAQGLNQLQ  420
RTTHYMNNSL PNQMPQIPSP VMSAPNVPND MQSDNRIRGP RNPFLHCNDT LTATAQVPGF  480
PYGSQIAEQN EIQELLSGAV IPSSSDGTIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	1e-12	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G02040.1