PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G00170.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 284aa    MW: 30817.5 Da    PI: 6.7849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G00170.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  OGLUM07G00170.1 61 YTCSFCRREFRSAQALGGHMNVH 83
                     9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MDAAAMERMA KHYWALWGAG VRSGWPAAAH GGGAEPSWEE KAFAQDAAGH LGGCVWPPRS  60
YTCSFCRREF RSAQALGGHM NVHRRDRARL RQCDDDDDDP IPPTVSICAP PPPPPPLLPA  120
AAAAPDSPSP PSLLLQISSP KSTTADHHQN HQQLQLQGTN SSPNSCIATI IKESRNKARL  180
FITTMPAPAP ATTHDLGLGG GKDDDDSISI SMEEIRRKRR RVDQPLTPTP SYSSERERRR  240
EDDPAAADAS NNKVIPSSSI LVNQLAMDMV GRQEIDLELR LGST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221RKRRR
2218222KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-22C2H2 family protein