PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G28090.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 436aa MW: 47912.3 Da PI: 9.9294 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.2e-10 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+Cr+f+r G CkyG++C++ H OGLUM06G28090.4 5 QEICRNFQR-GSCKYGAQCRYLH 26 79*******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence |
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQQQAKPN PFGFGTGSRQ QQQPSFGSQF 60 QQQQQQQQKP NPFGFGVQGA NAQSRNAPGP AKPFQNKWVR DPSAPTKQAE AVQPPQAQAA 120 HTSCEDPQSC RQQISEDFKN EAPIWKLTCY AHLRNGPCDI KGDISFEELR AKAYEEGKQG 180 HSLQSIVEGE RNLQNAKLME FTNLLNSARP SQTPSFPTMS SFPEVKNNSS FGASQTNGPP 240 VFSSFSQIGA ATNIGPGPGT TAPGMPASSP FGHPSSAPLA APTFGSSQMK FGVSSVFGNQ 300 GSGQPFGSFQ APRFPSSKSP ASSVQHRDID RQSQELLNGM VTPPSVMSEE SVGNNKNENQ 360 DDSIWLKEKW AIGERALILE AMLQLQGQQR NSTTNRRRIH KSEGRHGTLM WATRANNQLT 420 AVSTCRVSMF LLFFYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 3e-48 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G28090.4 |