PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25350.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 292aa    MW: 33102.7 Da    PI: 8.7809
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25350.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC122.81.4e-3815222429101
            NF-YC  29 ilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                       l adedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd++dflvdivprd+l
  OGLUM06G25350.1 152 FLPADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDL 224
                      5779*******************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MGGELSLPRE FKNRERKWRD YFPHLRLSLD PSPPSLLSSL SPFPICGGGG GARARRRRRG  60
VPQARCGRGS SASAHGGRRR RAGLEGWRGD LLVPALPASI WCWKYHKFWD KQERTWSHHH  120
NLSRQLVLLL VDHKCTLHTR LQQQCLQLLL SFLPADEDVR MISAEAPVIF AKACEIFILE  180
LTLRSWMHTE ENKRRTLQKN DIAAAITRTD MYDFLVDIVP RDDLKEEGVG LPRAGLPPLG  240
VPADSYPYGY YVPQQQVPGA GIAYGGQQGH PGYLWQDPQE QQEEPPAEQQ SD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.12e-45NF-YC family protein