PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G24700.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 426aa MW: 44261.9 Da PI: 9.3015

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G24700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	4e-41	180	256	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++sg++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++ OGLUM06G24700.1 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 256 6**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AAAAAQRAGM LQHHHHHMYD 60 GLDFAAAMQF GGGQDAPPHP QLLALPPSMA APPPPPMPMP LQMPMTMPMP GDVYPALGIV 120 KREGGGGGQD AAAGRIGLNL GRRTYFSPGD MLAVDRLLMR SRLGGVFGLG FGGAHHQPPR 180 CQAEGCKADL SGAKHYHRRH KVCEYHAKAS VVAASGKQQR FCQQCSRFHV LTEFDEAKRS 240 CRKRLAEHNR RRRKPAAAPT TAVAAAKDAV AAPVAAGKKP SGGAATSYTG DNKNVVSMSA 300 AKSPISSNTS VISCLAEQGK HAAAAARPTA LTLGGAPPHE SSAPQIGAML HHHHHHQQDH 360 MQVSSLVHIN GGGGGGGSNN ILSCSSVCSS ALPSTATNGE VSNQNNDNSH NNGGNNNMHL 420 FEVDFM

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AAAAAQRAGM LQHHHHHMYD  60
GLDFAAAMQF GGGQDAPPHP QLLALPPSMA APPPPPMPMP LQMPMTMPMP GDVYPALGIV  120
KREGGGGGQD AAAGRIGLNL GRRTYFSPGD MLAVDRLLMR SRLGGVFGLG FGGAHHQPPR  180
CQAEGCKADL SGAKHYHRRH KVCEYHAKAS VVAASGKQQR FCQQCSRFHV LTEFDEAKRS  240
CRKRLAEHNR RRRKPAAAPT TAVAAAKDAV AAPVAAGKKP SGGAATSYTG DNKNVVSMSA  300
AKSPISSNTS VISCLAEQGK HAAAAARPTA LTLGGAPPHE SSAPQIGAML HHHHHHQQDH  360
MQVSSLVHIN GGGGGGGSNN ILSCSSVCSS ALPSTATNGE VSNQNNDNSH NNGGNNNMHL  420
FEVDFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KRSCRKRLAEHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-45	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G24700.1