PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G24120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 393aa MW: 42325.8 Da PI: 9.9266

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G24120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.8e-30	247	306	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsa+d++v++ tYegeHnh OGLUM06G24120.1 247 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTVLVATYEGEHNHA 306 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MAKMLPPPSQ SVSSRPPSWL YIPPRRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIQFM 60 DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SVKKDHEVEA LEAELRRASE 120 ENKKLTEMLR AVVAKYTELQ GQVNDMMSAA AVNAGNHQSS TSEGGSVSPS RKRIRSVDSL 180 DDAAHHRKPS PPFVAAAAAA AYASPDQMEC TSAAAAAAAK RVVREDGKPK VSKRFVHADP 240 SDLSLVVKDG YQWRKYGQKV TKDNPCPRAY FRCSFAPACP VKKKVQRSAD DNTVLVATYE 300 GEHNHAQPPH HDAGSKTAAA AKHSQHQPPP SAAAAVVRQQ QEQAAAAGPS TEVAARKNLA 360 EQMAATLTRD PGFKAALVTA LSGRILELSP TKN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MAKMLPPPSQ SVSSRPPSWL YIPPRRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIQFM  60
DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SVKKDHEVEA LEAELRRASE  120
ENKKLTEMLR AVVAKYTELQ GQVNDMMSAA AVNAGNHQSS TSEGGSVSPS RKRIRSVDSL  180
DDAAHHRKPS PPFVAAAAAA AYASPDQMEC TSAAAAAAAK RVVREDGKPK VSKRFVHADP  240
SDLSLVVKDG YQWRKYGQKV TKDNPCPRAY FRCSFAPACP VKKKVQRSAD DNTVLVATYE  300
GEHNHAQPPH HDAGSKTAAA AKHSQHQPPP SAAAAVVRQQ QEQAAAAGPS TEVAARKNLA  360
EQMAATLTRD PGFKAALVTA LSGRILELSP TKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25000.1	3e-45	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G24120.1