PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23260.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 310aa MW: 33276.2 Da PI: 8.0957

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.2	1e-19	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + OGLUM06G23260.1 15 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 60 89****************************.*********985 PP
2	Myb_DNA-binding	52.6	1e-16	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w+ OGLUM06G23260.1 67 RRPFTAEEDATILRAHARLGNR-WAAIARLLQ-GRTDNAVKNHWN 109 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MGGGGGVEAD CDRIRGPWSP EEDEALRRLV ERHGARNWTA IGREIPGRSG KSCRLRWCNQ 60 LSPQVERRPF TAEEDATILR AHARLGNRWA AIARLLQGRT DNAVKNHWNC SLKRKLAVAT 120 TTTTTTGAAA APGVVADAAE LVERPCKRFS PTPDSPSGSG SGSDRSDLSH GGGFGQIFRP 180 VARTGAFEPV DCAISRRQEE DPFTSLSLSL PGTDQRFNHD SAHSHFQELP SSPSPPPPPP 240 PAAAASTTQY PFTPEFAAAM QEMIRAEVHK YMASVGVRAG CGDAGGADLH MPQLVEGVMR 300 AAAERVGRMH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	5e-60	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G23260.1