PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G21530.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 605aa MW: 66488.7 Da PI: 5.8269

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G21530.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	172	219	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l OGLUM06G21530.3 172 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 219 79******************************************9986 PP
2	Myb_DNA-binding	41.9	2.3e-13	225	268	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ OGLUM06G21530.3 225 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 268 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MQPDSTDRLA GRHAGCSERA ADTKQMIIFR KFTTKSKKHS MQYCKPRLHS PFRPRTRAIV 60 IGGPLLLASS SLLRLVYYST SLSAAAAAAH LVSTPGSSPM EEEEAARLAG SQGESPAMLH 120 PNGDGDGDGD GGDDEGDASG GEEEQGGVAR AGVRRRGGGG RVRVRGRIPL KKGPWTPDED 180 KRLREYVEAH GEGNWNRVQR NAGLNRCGKS CRLRWANHLK PDLKKGPFSK EEEEMIIKLH 240 LWLGNKWAKM ANSLPGRTDN EIKNFWNTRC KRIQRTGEPL YPKEFNHFKL TDLEVMNCES 300 PDESRAKKRT NEVLQGNGQS YKEVFFNNLD YSRPENYIRP NCVTPNSLPV DATSPFGSAI 360 ATQDQSVPFG SAIVSGHPIL DGNFSTSGTI QRPMNVELPS LQYPNYDFNN NNAWSYHDPL 420 GHPIDQVDFG SLRSEYLSPN NNGLLDALVH GGHGQGELAN SQGSFDACFP RVQCNQVIQS 480 NAFSLSSSFP IIGDDLLENS CHAFVGINNN ASSLFLDSQP PPLVDPTFWR HDVSLEPNLP 540 VYCQFNEELP PSNEQFAKDA DDAFGHGGLS DETNLAAAGQ GDEHDLENPW ASMPGACDIP 600 DFPSE

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MQPDSTDRLA GRHAGCSERA ADTKQMIIFR KFTTKSKKHS MQYCKPRLHS PFRPRTRAIV  60
IGGPLLLASS SLLRLVYYST SLSAAAAAAH LVSTPGSSPM EEEEAARLAG SQGESPAMLH  120
PNGDGDGDGD GGDDEGDASG GEEEQGGVAR AGVRRRGGGG RVRVRGRIPL KKGPWTPDED  180
KRLREYVEAH GEGNWNRVQR NAGLNRCGKS CRLRWANHLK PDLKKGPFSK EEEEMIIKLH  240
LWLGNKWAKM ANSLPGRTDN EIKNFWNTRC KRIQRTGEPL YPKEFNHFKL TDLEVMNCES  300
PDESRAKKRT NEVLQGNGQS YKEVFFNNLD YSRPENYIRP NCVTPNSLPV DATSPFGSAI  360
ATQDQSVPFG SAIVSGHPIL DGNFSTSGTI QRPMNVELPS LQYPNYDFNN NNAWSYHDPL  420
GHPIDQVDFG SLRSEYLSPN NNGLLDALVH GGHGQGELAN SQGSFDACFP RVQCNQVIQS  480
NAFSLSSSFP IIGDDLLENS CHAFVGINNN ASSLFLDSQP PPLVDPTFWR HDVSLEPNLP  540
VYCQFNEELP PSNEQFAKDA DDAFGHGGLS DETNLAAAGQ GDEHDLENPW ASMPGACDIP  600
DFPSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	9e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G21530.3