PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G20240.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 393aa    MW: 41378.9 Da    PI: 9.513
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G20240.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17204237134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OGLUM06G20240.1 204 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 237
                      *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MSTIYMSQLS ATLPLMEGEH HHHHQDHHQG HFQAFSLQPK DPPVLFPFVI SRRSSSSSSP  60
SDSTTLSYGS DHHMTQQQHQ HQALLEPQHM IGGSSAGIFA TPFPTVESIR DDMIERSQFD  120
PYDTEKLQAS CGLAKVVAGG KWSAVPAAKM KITRKMGEPS SGVVTGGAAT TVAPKKPRRR  180
PAQAYEDHGH GGAMGQAFGV IRVCSDCNTT KTPLWRSGPC GPKSLCNACG IRQRKARRAM  240
MASGLPASPN AAGPKAAAHS NVAAAAAAQP KVKKEKRADV DRSSLPFKKR CKAIQVEDHQ  300
TPPAATNAAA AAAIEETAES TTVAPPPAPT TKGGTLVDSI GLSWSKTHAT AAATASCSFR  360
PSPVAPGFAA AVQDEITDAA MLLMTLSCGL VRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181PKKPRRRP
2234276RKARRAMMASGLPASPNAAGPKAAAHSNVAAAAAAQPKVKKEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-19GATA family protein