PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G18230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 269aa    MW: 30811 Da    PI: 7.3757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G18230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.2e-53101391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  OGLUM06G18230.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKA 102
                      69****************************.9***************943444442456*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ ++   +g++ktLvfy grap+g+ktdW+mheyrl
  OGLUM06G18230.1 103 IFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 139
                      ***********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY  120
VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL  180
LHHHHPFPPA QLHGGAADHK HDGAGGHHHH HLMQPHHHYD DFPSFDPSMQ LPQLMSADQP  240
PPPPPSLLPG RLPLQYLGCE AADLLRFSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.14e-88NAC family protein