PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 403aa    MW: 42719.4 Da    PI: 6.0037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.8e-14138188255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ah ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  OGLUM06G17990.1 138 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 188
                      689*************************9...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MGDALCDQLL LVDSDGGEFI PHHADADADA DDLFTILETW EDCANVVAGG APATTTTLGS  60
PIAAAACISG VVGGQNHQQL PEPAAAKTVP ATNNKRREEE VADRDGHGDD DDGSPQKRHK  120
CCSPESSTTD VAAATTPKTA HIAVERNRRK QMNENLAVLR SLMPCFYVKR GDQASIIGGV  180
VDYIKELQQV LHSLEAKKQR KVYTDQVLSP RPPATVAASC CSPRPPPLSP RLPPQLLKST  240
PPLSPRLAVP ISPRTPPTPG SPYRLLRLPP PPPPASGSNY ASPAMTPTHH ETAAPSLDAI  300
AAELSAYASR QALGGGLLLP DVKVEFAGAN LVLKTVSQRS QGQAVKIIAA LEGRSLEILH  360
AKISTVDDTA VNSFTVKYIF GQIGIECELS AEELVQVIQQ TFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.19e-35bHLH family protein