PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17360.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 386aa    MW: 40981.3 Da    PI: 4.504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.4e-27216272257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++  tY+g H 
  OGLUM06G17360.1 216 PDSWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRLDPSFLLLTYTGAHS 272
                      599*************************99**************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MDGDAWWYAG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAA LLGEAWEYDD DPFSSFLAPP  60
MTAQQAALPA VWEEGDDGDA AWMAPLPGLQ TGGGWGDQAP MVVDELCGAL VVAPPPPPKQ  120
QEVLQVQQQP PPADNTQPTT DQQGSGGDGE STRAGGSRSA RRKYAAAAIY IVSVCFSDSC  180
IMWIRSLADD RGVRHACRKK QTRKEVVRVA ASGPAPDSWA WRKYGQKPIK GSPYPRGYYR  240
CSSNKNCAAR KQVERCRLDP SFLLLTYTGA HSGHDVPLHR NSLAGTTRHK PPPPPPLPSA  300
ADKSPATAAE AATASQSPGL SPTTPLRASS MELHGEDDAE AELQVEEDDM AIDDEDDDDV  360
ADETISTVPW GTPISDAIIA ASYEWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-35WRKY family protein