PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM06G11540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 401aa MW: 43665.3 Da PI: 4.9452 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.4e-06 | 33 | 75 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + + +C+ + +lC++C H+ H++v OGLUM06G11540.1 33 RPCDGCRAAPSVVYCRADAAYLCASCDARVHSAnrvasrHERV 75 67*****************************657788888776 PP | |||||||
2 | zf-B_box | 27.2 | 8.3e-09 | 75 | 120 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ l C+ + lC C ++ H+ H++vp+ OGLUM06G11540.1 75 VRVCEACERAPAALACRADAAALCVACDVQVHSAnplarrHQRVPV 120 689*****************************66899999*99986 PP | |||||||
3 | CCT | 66.2 | 9e-23 | 332 | 375 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irYe+RKa+Ae RpR+KGrF+k++ OGLUM06G11540.1 332 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 375 9*****************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence |
MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP WARPCDGCRA APSVVYCRAD AAYLCASCDA 60 RVHSANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA CDVQVHSANP LARRHQRVPV 120 APLPAVAIPA TSVLAEAVVA TATVLGDKDE EVDSWLLLSK DPDNNNNNNN NNNNNSNSSN 180 NGMYFGQVDE YFDPVGYNSY YDNRIENNQD QQYGMHEQQE QQQQQQEMQK EFAEKEGSEC 240 VVPSQITMLS EQQHSGYGVV GADQAASMTA GVSAYTDSIS NSISFSSMEV GIVPDSTVID 300 MPNSSILTPA GAINLFSGPS LQMSLHFSSM DREARVLRYR EKKKARKFEK TIRYETRKAY 360 AEARPRIKGR FAKRSDVQIE VDQMFSTAAL SDGSYGTVPW F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-65 | CO-like family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM06G11540.1 |