PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G07010.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 301aa MW: 32244.8 Da PI: 7.4984

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G07010.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.8	2.2e-24	87	130	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e OGLUM06G07010.1 87 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 130 79***************************************997 PP
2	QLQ	62.6	1e-21	11	45	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++ OGLUM06G07010.1 11 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 45 5******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MMAGGGSGRC LFTATQWQEL EHQALIYKYM AAGAPVPPDL LLHLRHRAAA AAAADVDTVP 60 SLAFPPHHLG WGCYGAAAAQ YGRRVEDPEP GRCRRTDGKK WRCSREAYGE SKYCEKHMHR 120 GKNRSRKPVE MPPPAAASVY RPSALSISPP PHDADAPSYG AGAGAPLQLH LDSFHASTSP 180 PPSYHRYAHT SSAPLFPSSA AGYGGGWSLS KEHCLTLGGA AADLSLDEPA DHHHDATSAT 240 TEKPLRRFFD EWPRSDDGRT PWDGTQLSIS IPTAAAASPD LAIAGAASRY HSNGDHLRTS 300 E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-42	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G07010.1