PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 362aa    MW: 39718.1 Da    PI: 4.4395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19114163255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++a +++++g
  OGLUM06G06300.1 114 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 163
                      69*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MCGGAILSDL IPPPRRVTAG DLWLEKTKKQ QQQQKKNKGA RRLPLRQEEE DDFEADFEEF  60
EVDSGEWEVE SDADEAKPLA APRSGFAKGG LKNTTVAGAD GPAARSAKRK RKNQFRGIRQ  120
RPWGKWAAEI RDPRKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDGAPVASQR  180
SHAEPSSMNM PAFSIEEKPA VMSAGNNTMY NTNAYAYPAV EYTLQEPFVQ IQNVSFVPAM  240
NAIEDTFVNL SSDQGSNSFG CSDFSQENDI KTPDITSMLA PTMTGVDDSA FLQNNASDAM  300
VPPVMGNASI DLADLEPYMK FLIDGGSDES IDTLLSSDGS QDVASSMDLW SFDDVPVSAE  360
FY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.12e-38ERF family protein