PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G06280.4

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 478aa MW: 50756.7 Da PI: 4.9193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G06280.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	327	372	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq OGLUM06G06280.4 327 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 372 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSN NLRSNSIPPG VLQCNSTSGT 120 FDAKLDTPGL AELPHALSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN VSSFMEPVNL 180 DAFGFQGAQN VAMLNKTSLP NGNPSLFDNA AIASLHDSKE FLNGGSIPSF GTVLQALGAG 240 GLKAAQQEQN IRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHNSEY PINHSSDVEP 300 QANSAPGNSA NAKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQDLVP NSNKADKASM 360 LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HSNPSLSAST ISQGAPEIPD 420 SEDSSAFEQE VVKLMETSIT SAMQYLQNKG LCLMPIALAS AISNQKGMTA AAAIPPEK

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSN NLRSNSIPPG VLQCNSTSGT  120
FDAKLDTPGL AELPHALSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN VSSFMEPVNL  180
DAFGFQGAQN VAMLNKTSLP NGNPSLFDNA AIASLHDSKE FLNGGSIPSF GTVLQALGAG  240
GLKAAQQEQN IRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHNSEY PINHSSDVEP  300
QANSAPGNSA NAKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQDLVP NSNKADKASM  360
LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HSNPSLSAST ISQGAPEIPD  420
SEDSSAFEQE VVKLMETSIT SAMQYLQNKG LCLMPIALAS AISNQKGMTA AAAIPPEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G06280.4