PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G06280.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 446aa MW: 47606.3 Da PI: 5.1041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G06280.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.3e-12	295	340	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq OGLUM06G06280.2 295 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 340 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSN NLRSNSIPPG VLQCNSTSGT 120 FDAKLDTPAP TLCSAFQNVS SFMEPVNLDA FGFQGAQNVA MLNKTSLPNG NPSLFDNAAI 180 ASLHDSKEFL NGGSIPSFGT VLQALGAGGL KAAQQEQNIR NIPLPTFTSG SHLAVTDAQG 240 PPLPSKIPPL IHDHNSEYPI NHSSDVEPQA NSAPGNSANA KPRTRARRGQ ATDPHSIAER 300 LRREKISERM KNLQDLVPNS NKADKASMLD EIIDYVKFLQ LQVKVLSMSR LGAPGAVLPL 360 LRESQTECHS NPSLSASTIS QGAPEIPDSE DSSAFEQEVV KLMETSITSA MQYLQNKGLC 420 LMPIALASAI SNQKGMTAAA AIPPEK

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSN NLRSNSIPPG VLQCNSTSGT  120
FDAKLDTPAP TLCSAFQNVS SFMEPVNLDA FGFQGAQNVA MLNKTSLPNG NPSLFDNAAI  180
ASLHDSKEFL NGGSIPSFGT VLQALGAGGL KAAQQEQNIR NIPLPTFTSG SHLAVTDAQG  240
PPLPSKIPPL IHDHNSEYPI NHSSDVEPQA NSAPGNSANA KPRTRARRGQ ATDPHSIAER  300
LRREKISERM KNLQDLVPNS NKADKASMLD EIIDYVKFLQ LQVKVLSMSR LGAPGAVLPL  360
LRESQTECHS NPSLSASTIS QGAPEIPDSE DSSAFEQEVV KLMETSITSA MQYLQNKGLC  420
LMPIALASAI SNQKGMTAAA AIPPEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G06280.2