PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G05610.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 422aa MW: 41665 Da PI: 6.32

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G05610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	217	262	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OGLUM06G05610.1 217 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 262 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA 60 SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT 120 DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGGGG GAGQPPFGQG GSMSGQSFGG 180 PAASGGTAPV TSSGGGGTAP PRQQRVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP 240 NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGSSNGGG 300 GKASKGGTGG EGGGGGGGGG GGGTGGGMRV TEQQVAKMME EDMGTAMQYL QGKGLCLMPI 360 SLASAISSAT SSASLLSRPS IRHAGAPPQT MLDAAGPTSP AAMSNGDDPR HAKADGGAGG 420 TQ

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA  60
SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT  120
DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGGGG GAGQPPFGQG GSMSGQSFGG  180
PAASGGTAPV TSSGGGGTAP PRQQRVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP  240
NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGSSNGGG  300
GKASKGGTGG EGGGGGGGGG GGGTGGGMRV TEQQVAKMME EDMGTAMQYL QGKGLCLMPI  360
SLASAISSAT SSASLLSRPS IRHAGAPPQT MLDAAGPTSP AAMSNGDDPR HAKADGGAGG  420
TQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-38	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G05610.1