PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G04430.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 34619.9 Da    PI: 7.1723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G04430.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16107153455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  OGLUM06G04430.1 107 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 153
                      6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MDEQRGRGGF DELVLLHQQQ EQRRRREQQQ EEEEEEEVRR QMFGAVVGGL AAFPAAAAAL  60
GQQQVDCGGE LGGFCDSEAG GSSEPEAAAG ARPRGGSGSK RSRAAEVHNL SEKRRRSKIN  120
EKMKALQSLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLS MRNGVYLNPS YLSGALEPAQ  180
ASQMFAALGG NNVTVAHPGT VMPPVNQSSG AHHLFDPLNS PPQNQPQSLI LPSVPSTAIP  240
EPPFHLESSQ SHLRQFQLPG SSEFHKILFL HVLLSVKDGV SWRDNAKAPP IITSRKSARK  300
RDELHQERII HVEHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-34bHLH family protein