PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G00600.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 422aa MW: 45066.7 Da PI: 4.7499

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50	5.6e-16	308	399	6	98
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkv 96 +s+ + + ++++p +f h + ++e +t + ++ g+sW + +++ ++ l +GW+eF+ +n+L +gD +vF+l+ g + e+ v++ OGLUM06G00600.1 308 AKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAtGGLEFQVQI 397 4566667799*****6..6666778889***********..*****************************7644555666677776 PP E- CS B3 97 fr 98 +r OGLUM06G00600.1 398 LR 399 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPK GAPWIRYHGN 60 YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG 120 DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE 180 SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL 240 DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN 300 PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD 360 AGWSEFAVDN RLLVGDACVF ELVAMGATGG LEFQVQILRG GLPAEVVTSK GLTSDQPILI 420 VD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MAPPSDSDDS APIPAGAISK LLIVIAMQTE ALPLVNKFHL VEAEESIFPK GAPWIRYHGN  60
YKGLHVDLVW PGKDPVLGVD CVGTVSAALV TYASIQSLKP DLIINAGTAG GFKAKGADIG  120
DVYLASDVAF HDRRIPIPVF DMYGIGTRKT FATPNILKEL NLKVGKLSTG DSLDMSPHDE  180
SAILNNDATV KDMEGAAVAY VADMFSTPAI FVKAVTDIVD GEKPTAEEFL QNLVAVTAAL  240
DKAVTEVMEL DTDPTKLKAK PIIKPKVEPC DDDDELPPPP PPASGSGEDW EATTPLAAGN  300
PFFTALIAKS HLHPKFQMWI PPRFQHRLAE PEARTAAVLH SGGKSWATSY CGHLKMKKLD  360
AGWSEFAVDN RLLVGDACVF ELVAMGATGG LEFQVQILRG GLPAEVVTSK GLTSDQPILI  420
VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-06	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G00600.1