PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 504aa    MW: 53701.1 Da    PI: 5.7393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS202.42.6e-621254751371
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      lv+ Ll++A+ +++gd + a+++Larl+++     sp g    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ ++
  OGLUM06G00270.1 125 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALADA 208
                      5789*************************976666676655668899999999998665554.........44333.4669999********** PP

             GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      sP+++f+ +t  qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La     +  ++pp+l++T+++sp s++  el+ t+e L++fA+elg+pf
  OGLUM06G00270.1 209 SPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAELGIPF 301
                      **********************************************5533.3578889************************************ PP

             GRAS 177 efnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      ef++lv + l++ ++   L+  p+Ea+aV+l      +         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++al++
  OGLUM06G00270.1 302 EFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGAFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRSCAALLE 380
                      ********999986515799999**********998887........56789********************966.......5667899***** PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                      sl+a  ++  +  +kvE+++l+++++ +    g++           +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W+
  OGLUM06G00270.1 381 SLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQ 467
                      **988.5666999*************998888887......678889*********************************************** PP

             GRAS 364 drpLvsvS 371
                      + +Lvs+S
  OGLUM06G00270.1 468 RSELVSIS 475
                      ******99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSPSTSL GSCSSKPPED PPPPPIAADD  60
FCEDWDAVVD MHMLAPAPAP DSSFLRWIMD AGYADADTFP DHPSFDSDLL QLPMPMPSDH  120
PPQPLVDDLL DAARLLDAGD STSAREILAR LNHRLPSLPS PPGHAHPPLL RAAALLRDAL  180
LPPTALPVSS TPLDVPLKLA AHKALADASP TVQFTTFTST QAFLDALGSA RRLHLLDFDV  240
GFGAHWPPLM QELAHHWRRA AGPPPNLKVT ALVSPGSSHP LELHLTNESL TRFAAELGIP  300
FEFTALVFDP LSSASPPLGL SAAPDEAVAV HLTAGSGAFS PAPAHLRVVK ELRPAVVVCV  360
DHGCERGALN LLRSCAALLE SLDAAGASPD VVSKVEQFVL RPRVERLAVG GGDKLPPPLQ  420
SMLASAGFAA LQVSNAAEAQ AECLLRRTAS HGFHVEKRQA ALALWWQRSE LVSISLAAQE  480
RYFAAFKQSR IMEAGSLSVS DKLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-59GRAS family protein