PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G00210.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 364aa MW: 41542.2 Da PI: 6.8291

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.7	1.3e-54	17	153	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg OGLUM06G00210.1 17 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 109 69**************************.99**********9557777664455778*************************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk+++++ ++ lvg++ktLv+y+grap+g+k+dW+mheyrle OGLUM06G00210.1 110 RDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 153 **98434445**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW 60 DLQERCRING GSAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH 120 SLLVGMRKTL VYYRGRAPNG HKSDWIMHEY RLETSETAPP QEEGWVVCRV FKKRLPTTRR 180 DSDHDAPCGS WYVDEDAPGA FMSPMMITRS SILRPHQHHA GITLQEQHLH TTYKHRDLTS 240 KIQQLQVPAA GHHLLNTMPH DLESSTSSFH SLLVSPDHHQ INMHHAQADP FFDDMHAVDQ 300 ATTTDWRVLD KFVASQLSND ATNKPADHYT DEGDILQVSD KQQEVAAADY ASTSTSSSQI 360 DPWK

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW  60
DLQERCRING GSAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH  120
SLLVGMRKTL VYYRGRAPNG HKSDWIMHEY RLETSETAPP QEEGWVVCRV FKKRLPTTRR  180
DSDHDAPCGS WYVDEDAPGA FMSPMMITRS SILRPHQHHA GITLQEQHLH TTYKHRDLTS  240
KIQQLQVPAA GHHLLNTMPH DLESSTSSFH SLLVSPDHHQ INMHHAQADP FFDDMHAVDQ  300
ATTTDWRVLD KFVASQLSND ATNKPADHYT DEGDILQVSD KQQEVAAADY ASTSTSSSQI  360
DPWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	2e-91	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G00210.1