PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G00040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 679aa MW: 75393 Da PI: 6.5659

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.3	1.1e-47	19	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrF+Ptdeelv +yLk k++g++++ i++vd+ ++ePwdLp + +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ + OGLUM06G00040.1 19 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 112 79***********************999889***********5347777888******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ g l+g+kktLvf++grap+g +t W+mheyr OGLUM06G00040.1 113 RSRpAGPLIGIKKTLVFHRGRAPRGLRTGWIMHEYRT 149 988889***************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MKQGKVEMTP AVAAAAAVLP VGFRFRPTDE ELVRHYLKGK IAGRSHPDLL LIPDVDLSTC 60 EPWDLPAMSV IKSDDPEWFF FAPRDRKYPG GHRSNRSTAA GYWKATGKDR LIRSRPAGPL 120 IGIKKTLVFH RGRAPRGLRT GWIMHEYRTT EPHFQSGKNG KFVLYRLFNK HEQDDTHTPA 180 SNLDQQLHSM SSQGNPQNGT PAVQLALASI MKDHQTLPSS GFTQLTEIQD ASTSVHDKEK 240 TVAHDDAFLD VLSQLPDLEP EQRYNGFPNI TSPIRPYSDH PFVGNLGEQD LSAHFGSTLS 300 EQDLQSLLFS PNYTKMDKHP TGNVESNPTA SSSNPNNNTL LMDSWRKNDL YQMLLIQCAD 360 NTDATCRSSS INAPQTETSD ANLEARAQSS SMVYSGVAEG SLLCNQDQLH SAINPHMESQ 420 KSGAFCWAGL QTPYPQHWFD TMVEPCRSGM TFSDALKEQG QEQAPSMKHL TAQDLVDPQQ 480 GTAARRIRLV CSVERASVSQ PVSSHLQSEY EAGSCCNTRN SSNNKKKSVR SEDEAGSCCN 540 TGSSSNNHSE ENDDAASQIM DGEPMHIQCK EDTPIQVDHS VEVMDKLQGF SFHEEMLVHA 600 NQPRGTNLKQ RLLRAESRNS NENNAPSLET RGQQHAPHIQ IWTSSVVRLG WGWQWPALFV 660 MAGSLLLLVG VWKSLNHTT

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MKQGKVEMTP AVAAAAAVLP VGFRFRPTDE ELVRHYLKGK IAGRSHPDLL LIPDVDLSTC  60
EPWDLPAMSV IKSDDPEWFF FAPRDRKYPG GHRSNRSTAA GYWKATGKDR LIRSRPAGPL  120
IGIKKTLVFH RGRAPRGLRT GWIMHEYRTT EPHFQSGKNG KFVLYRLFNK HEQDDTHTPA  180
SNLDQQLHSM SSQGNPQNGT PAVQLALASI MKDHQTLPSS GFTQLTEIQD ASTSVHDKEK  240
TVAHDDAFLD VLSQLPDLEP EQRYNGFPNI TSPIRPYSDH PFVGNLGEQD LSAHFGSTLS  300
EQDLQSLLFS PNYTKMDKHP TGNVESNPTA SSSNPNNNTL LMDSWRKNDL YQMLLIQCAD  360
NTDATCRSSS INAPQTETSD ANLEARAQSS SMVYSGVAEG SLLCNQDQLH SAINPHMESQ  420
KSGAFCWAGL QTPYPQHWFD TMVEPCRSGM TFSDALKEQG QEQAPSMKHL TAQDLVDPQQ  480
GTAARRIRLV CSVERASVSQ PVSSHLQSEY EAGSCCNTRN SSNNKKKSVR SEDEAGSCCN  540
TGSSSNNHSE ENDDAASQIM DGEPMHIQCK EDTPIQVDHS VEVMDKLQGF SFHEEMLVHA  600
NQPRGTNLKQ RLLRAESRNS NENNAPSLET RGQQHAPHIQ IWTSSVVRLG WGWQWPALFV  660
MAGSLLLLVG VWKSLNHTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-65	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G00040.1