PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G28780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 336aa MW: 35975 Da PI: 6.8436

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G28780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.1	1.8e-33	188	245	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers++dp++v++tYeg+H+h+ OGLUM05G28780.1 188 EDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHP 245 8********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MSGPGGGGHG LYEDHPAAAG FLPFDHDDDV VASFFFGRSA ASGGGAGAGA GAGDDDGVGL 60 ITPYSSITDY LQGFLQDPVY ASSPLGGDAA VKHETVVDHP SQAGGVAAAP ATPNSSVLSS 120 SSEAAGGDDL RRCKKGRRPE DEEEEEIDDE GSAVQSCKTN KMKNKKGAKK EREPRVAFMT 180 KSEVDHLEDG YRWRKYGQKA VKNSSYPRSY YRCTAPRCGV KKRVERSEQD PSMVITTYEG 240 QHTHPSPVSY HMHRQQGLMH VSARGVMPGA AGAYQFGAPP PPLLGFDEAL AARVRMTMNQ 300 QQQQQLGFVP SIHAAAARPT MPPLHLYTAR QDLFLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	169	RRCKKGRRPEDEEEEEIDDEGSAVQSCKTNKMKNKKGAK
2	134	172	RRCKKGRRPEDEEEEEIDDEGSAVQSCKTNKMKNKKGAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	9e-43	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G28780.1