PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G22330.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 402aa MW: 45979.2 Da PI: 4.8861

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G22330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.8e-17	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed +l +++k++G ++Wk++ + g+ R++k+c++rw ++l OGLUM05G22330.1 43 KGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHL 90 79****************************99**********97 PP
2	Myb_DNA-binding	49.2	1.2e-15	96	139	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ OGLUM05G22330.1 96 KGAFSKEEENKIINLHRKMGNK-WSRMAADLP-GRTDNEIKNYWNT 139 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MHESDSDPDS DRTHWYMSNS DDESFVDKDK DCRRSTVAPL LKKGPWTSWE DSILEKYIKK 60 HGERNWKLVQ KNTGLLRCGK SCRLRWMNHL RPNLKKGAFS KEEENKIINL HRKMGNKWSR 120 MAADLPGRTD NEIKNYWNTR IKKCKNNRSP LYPANVCNDA LNEDQHESAD PNVREKLTNN 180 QLEDTTSMYS APQFSDASIS NILDRRLASK DYDSIEDQRN RIEVAAEYEI SLPVLKTTNN 240 DIFPSASIFA NHGISNGNLS ALSTTDALQM ELPLIQFDPN NQFVYSRAYA THLTNFALLN 300 DQSEELLNDT DVLNYVVMKE ELSGGSLSPT INMPCEAHNS MAASNELVVP RYEGDAPPLQ 360 DDFTSYFYLN DTNLSIFEDT NELFLENKLD TKGELVMACY VS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MHESDSDPDS DRTHWYMSNS DDESFVDKDK DCRRSTVAPL LKKGPWTSWE DSILEKYIKK  60
HGERNWKLVQ KNTGLLRCGK SCRLRWMNHL RPNLKKGAFS KEEENKIINL HRKMGNKWSR  120
MAADLPGRTD NEIKNYWNTR IKKCKNNRSP LYPANVCNDA LNEDQHESAD PNVREKLTNN  180
QLEDTTSMYS APQFSDASIS NILDRRLASK DYDSIEDQRN RIEVAAEYEI SLPVLKTTNN  240
DIFPSASIFA NHGISNGNLS ALSTTDALQM ELPLIQFDPN NQFVYSRAYA THLTNFALLN  300
DQSEELLNDT DVLNYVVMKE ELSGGSLSPT INMPCEAHNS MAASNELVVP RYEGDAPPLQ  360
DDFTSYFYLN DTNLSIFEDT NELFLENKLD TKGELVMACY VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	3e-58	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G22330.1