PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21920.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 520aa    MW: 54707.9 Da    PI: 6.2777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.55.1e-861395102373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf++A+aarl++s+ ++++ l+p + +    +   aa++++++v P+ +++
  OGLUM05G21920.1 139 IALLMECAAAMSVGNLAGANGALLELSQMASPYApSCGERLVAYFARAMAARLVGSWVGVAAPLAPPPPPC--AAAINAAFRALYNVAPFARLA 230
                      689*******************************8889************************998888873..666777999************ PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +l++NqaIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp +R+Tg+g     s+  l+ tg++La +A++l ++fef +++ +  
  OGLUM05G21920.1 231 YLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYPVAKRPG 320
                      *************************988447**************************....9**************************877777 PP

             GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleakl 275
                      ++  + ++  ++ gEa+aV++    h ++d  ++        ++lv+ l+P  v++veqe  h+++    +Fl+rf++al++ysa+fd++ a+ 
  OGLUM05G21920.1 321 DADAVADMPGRRpGEAVAVHWLR--HAMYDAAGDDGA----AMRLVRWLEPAAVTLVEQERAHGAGgghgRFLDRFVSALHHYSAVFDAMGASR 408
                      7778888855555********99..778755555555....9******************88855445559*******************9998 PP

             GRAS 276 pres.eerikvErellgreivnvvacegaerre.rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdr 365
                      p  +   r+  E+ +lgrei nv+a  g +r + r++  ++Wre l + GF  ++ +      a+l+   ++ + gy+v  + +g++ lgWk+ 
  OGLUM05G21920.1 409 PDGEdASRHLAEHGVLGREIANVLAVGGPARSNgRERPGGSWREVLARHGFVHAAGGGGGGGRAQLVAGACPgGLGYTVAGDhDGTVRLGWKGT 502
                      8877689999******************998652777889********************************99******66166666****** PP

             GRAS 366 pLvsvSaW 373
                      pL++vSaW
  OGLUM05G21920.1 503 PLYAVSAW 510
                      ******** PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MQKPYLIDWS LINQLMTGRG SDMQDSLGLM QFHDHHQYLY SSSSSNLPLQ QPLLSHHHRF  60
LEANEGCAGE DDSPEFVEPA AAAAAAGTFE QRPELGACKE VYSEEGGAAE ERTGVAMAGN  120
DVEQVVVEEE EEAHGVRMIA LLMECAAAMS VGNLAGANGA LLELSQMASP YAPSCGERLV  180
AYFARAMAAR LVGSWVGVAA PLAPPPPPCA AAINAAFRAL YNVAPFARLA YLACNQAILE  240
AFHGKRLVHI VDLDVVPGGA LQWLSLLPAL AARPGGPPVI RVTGFGMSAS VLHDTGNQLA  300
GLARKLCMSF EFYPVAKRPG DADAVADMPG RRPGEAVAVH WLRHAMYDAA GDDGAAMRLV  360
RWLEPAAVTL VEQERAHGAG GGHGRFLDRF VSALHHYSAV FDAMGASRPD GEDASRHLAE  420
HGVLGREIAN VLAVGGPARS NGRERPGGSW REVLARHGFV HAAGGGGGGG RAQLVAGACP  480
GGLGYTVAGD HDGTVRLGWK GTPLYAVSAW AWCSPPHARA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-58GRAS family protein