PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G21440.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 332aa MW: 35384.2 Da PI: 4.5118

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G21440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	73.2	3.3e-23	126	191	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59 +dD++ WrKYGqK++k+s++pr YYrC+++ gC+++k+v++s++d + v +itY geH+++ OGLUM05G21440.1 126 MDDKFLWRKYGQKDIKNSKYPRFYYRCSYKddhGCTATKQVQQSEDDDDtaspVYVITYFGEHTCR 191 58*************************99999******998762233578*****996 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MALTMVSLAA IADRKPTAAS AQLVAEGRES AARLYALLVG SSALHGPVGL TEQILLCFDR 60 ALAKLHGVNL AGAEDDDDAA GNGNSRKRKS GRGRGLTAAS AAASSKRMRV SSAGGNGARI 120 ERKATMDDKF LWRKYGQKDI KNSKYPRFYY RCSYKDDHGC TATKQVQQSE DDDDTASPVY 180 VITYFGEHTC RPGIDAAAMV VDGGEEEDQL SPAQMVISFA SSGGGGDASV SWPCSGDDAQ 240 NNSETSHESR PPDQAPAGEE EERLRPCTTA DVSDEPIMDQ STPPAPELLA DLKPMDGCLL 300 DGESLFGMDE LVYFHELSAA LGLLDRDWAA PV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	90	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22570.1	6e-21	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G21440.1