PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G19710.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 316aa    MW: 34128.3 Da    PI: 7.0058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G19710.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-083882244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+W++eE + + +a + l  +   +W+++a  ++ g+t  ++  ++
  OGLUM05G19710.1 38 GAWSQEENKVFEQALAALDRNdpeRWERVALLLP-GKTVADVMTHY 82
                     79*****************99*************.********999 PP
2Myb_DNA-binding45.61.6e-14152196347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  OGLUM05G19710.1 152 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 196
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MMKESYMEVL PPAPAHYFVG QAAAAGGWFL PDRRGGGGAW SQEENKVFEQ ALAALDRNDP  60
ERWERVALLL PGKTVADVMT HYDDLENDVC FIEAGLVPFP HYGAAGGGGG SGFTLDWDGG  120
DDPAGLGFKR SCYMVGGKRA RGPDQERKKG VPWTEEEHKL FLMGLKKYGR GDWRNISRNF  180
VTSRTPTQVA SHAQKYFIRL NSGGKDKRRS SIHDITTVNL PDDDHGNPSP SPPPSVLTAH  240
SSSSAAAVSE QFGVLVDGKP PPPPPLGRGA GHHHFMPHPY AQVKIEAGNS HVAGGGRLDD  300
SVLVQMQCGQ LMQPLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-81MYB family protein