PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G18240.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 489aa MW: 54259.4 Da PI: 5.1326

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G18240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.1	7.2e-49	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd elv++yLk+k+ gkk + ++i++v++yk+ PwdLp + ++++++ ew+fF++rdkky++g+r+nr+t +gyWk++gkd+++ OGLUM05G18240.1 6 LPPGFRFHPTDVELVSYYLKRKIMGKKPLI-QAISDVELYKFAPWDLPaQsCLQSRDLEWFFFCPRDKKYPNGSRTNRSTPNGYWKTSGKDRTI 98 79***********************777.88**********95347778888******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg kktL+f++g+apkg++tdWvm ey++ OGLUM05G18240.1 99 EL-NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKM 133 .999****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MAQTCLPPGF RFHPTDVELV SYYLKRKIMG KKPLIQAISD VELYKFAPWD LPAQSCLQSR 60 DLEWFFFCPR DKKYPNGSRT NRSTPNGYWK TSGKDRTIEL NSRIVGSKKT LIFHEGKAPK 120 GNRTDWVMYE YKMEDNQLVS AGFSKDDFAL CKIFKKSGLG PRIGEQYGAP FNEEEWEHAD 180 AEMFPLLPNV ETSVFPLLPS SEVVNSTDDT RVQPSVAARA IEELPVQHLP HVCAGNGSTY 240 QNITVTGESA LMELPSQHSV ESIGDEVVSV DNCSNVVNNA DSPVIEGLVL EELSRFLTDS 300 PHHGNPVGEH SGLPPMSEAE AHAFEVSTND LYNEIAGLAE LGVPNGDGFS PSNAGVTEQQ 360 PTYFGVPNSE NYHAVPTVIT KSRTVLEDSD TDDLVGFHML AVLRNRCVFM ATCCRSELSQ 420 TSLNLSRGLL LDLLVLELVV TASIVRPTMY IVLKTETVHV FGLKLYKHMG GNCASVRPEI 480 VRPFELNQR

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MAQTCLPPGF RFHPTDVELV SYYLKRKIMG KKPLIQAISD VELYKFAPWD LPAQSCLQSR  60
DLEWFFFCPR DKKYPNGSRT NRSTPNGYWK TSGKDRTIEL NSRIVGSKKT LIFHEGKAPK  120
GNRTDWVMYE YKMEDNQLVS AGFSKDDFAL CKIFKKSGLG PRIGEQYGAP FNEEEWEHAD  180
AEMFPLLPNV ETSVFPLLPS SEVVNSTDDT RVQPSVAARA IEELPVQHLP HVCAGNGSTY  240
QNITVTGESA LMELPSQHSV ESIGDEVVSV DNCSNVVNNA DSPVIEGLVL EELSRFLTDS  300
PHHGNPVGEH SGLPPMSEAE AHAFEVSTND LYNEIAGLAE LGVPNGDGFS PSNAGVTEQQ  360
PTYFGVPNSE NYHAVPTVIT KSRTVLEDSD TDDLVGFHML AVLRNRCVFM ATCCRSELSQ  420
TSLNLSRGLL LDLLVLELVV TASIVRPTMY IVLKTETVHV FGLKLYKHMG GNCASVRPEI  480
VRPFELNQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	5e-79	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G18240.1