PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G17090.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 840aa MW: 91890.3 Da PI: 6.1924

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G17090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.3	5.7e-35	169	243	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gCead+ e+k yhrrh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k OGLUM05G17090.1 169 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 243 ************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MDAPGGGGGG GGGGVDAGEP VWDWGNLLDF AVHDDDSLVL PWGDDSIGIE ADPAEAALLP 60 PAPSPQPAEA EAEAAGPASL PSSMQAEGSK RRVRKRDPRL VCPNYLAGRV PCACPEIDEM 120 AAALEVEDVA TELLAGARKK PKGAGRGSGA AVGGSGGGAS RGTPAEMKCQ VPGCEADIRE 180 LKGYHRRHRV CLRCAHAAAV MLDGVQKRYC QQCGKFHILL DFDEDKRSCR RKLERHNKRR 240 RRKPDSKGIL EKDIDDQLDF SADGSGDGEL REENIDVTTS ETLETVLSNK VLDRETPVGS 300 DDVLSSPTCA QPSLQIDQSK SLVTFAASVE ACLGTKQENT KLTNSPVHDT KSTYSSSCPT 360 GRVSFKLYDW NPAEFPRRLR HQIFEWLSSM PVELEGYIRP GCTILTVFVA MPQHMWDKLS 420 EDTGNLVKSL VNAPNSLLLG KGAFFIHVNN MIFQVLKDGA TLTSTRLEVQ SPRIHYVHPS 480 WFEAGKPIDL ILCGSSLDQP KFRSLVSFDG LYLKHDCRRI LSHETFDCIG SGEHILDSQH 540 EIFRINITTS KLDTHGPAFV EVENMFGLSN FVPILVGSKH LCSELEQIHD ALCGSSDISS 600 DPCELRGLRQ TAMSGFLIDI GWLIRKPSID EFQNLLSLAN IQRWICMMKF LIQNDFINVL 660 EIIVNSLDNI IGSELLSNLE KGRLENHVTE FLGYVSEARN IVDNRPKYDK QRQVDTRWAG 720 DYAPNQPKLG ISVPLAESTG TSGEHDLHST NAASGEEENM PLVTKALPHR QCCHPEISAR 780 WLNAASIGAF PGGAMRMRLA TTVVIGAVVC FAACVVLFHP HRVGVLAAPV KRYLSRNYSS

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MDAPGGGGGG GGGGVDAGEP VWDWGNLLDF AVHDDDSLVL PWGDDSIGIE ADPAEAALLP  60
PAPSPQPAEA EAEAAGPASL PSSMQAEGSK RRVRKRDPRL VCPNYLAGRV PCACPEIDEM  120
AAALEVEDVA TELLAGARKK PKGAGRGSGA AVGGSGGGAS RGTPAEMKCQ VPGCEADIRE  180
LKGYHRRHRV CLRCAHAAAV MLDGVQKRYC QQCGKFHILL DFDEDKRSCR RKLERHNKRR  240
RRKPDSKGIL EKDIDDQLDF SADGSGDGEL REENIDVTTS ETLETVLSNK VLDRETPVGS  300
DDVLSSPTCA QPSLQIDQSK SLVTFAASVE ACLGTKQENT KLTNSPVHDT KSTYSSSCPT  360
GRVSFKLYDW NPAEFPRRLR HQIFEWLSSM PVELEGYIRP GCTILTVFVA MPQHMWDKLS  420
EDTGNLVKSL VNAPNSLLLG KGAFFIHVNN MIFQVLKDGA TLTSTRLEVQ SPRIHYVHPS  480
WFEAGKPIDL ILCGSSLDQP KFRSLVSFDG LYLKHDCRRI LSHETFDCIG SGEHILDSQH  540
EIFRINITTS KLDTHGPAFV EVENMFGLSN FVPILVGSKH LCSELEQIHD ALCGSSDISS  600
DPCELRGLRQ TAMSGFLIDI GWLIRKPSID EFQNLLSLAN IQRWICMMKF LIQNDFINVL  660
EIIVNSLDNI IGSELLSNLE KGRLENHVTE FLGYVSEARN IVDNRPKYDK QRQVDTRWAG  720
DYAPNQPKLG ISVPLAESTG TSGEHDLHST NAASGEEENM PLVTKALPHR QCCHPEISAR  780
WLNAASIGAF PGGAMRMRLA TTVVIGAVVC FAACVVLFHP HRVGVLAAPV KRYLSRNYSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	244	KRSCRRKLERHNKRRRRKP
2	230	242	RRKLERHNKRRRR
3	237	244	NKRRRRKP
4	238	243	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-145	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G17090.1