PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G15720.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 324aa    MW: 32757.3 Da    PI: 8.5011
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G15720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.71.8e-69982633154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkls 92 
                      sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + aass  ++sa    ++a++k++r l s++++++s+t++s
  OGLUM05G15720.1  98 SGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAfpaaTTASAKKPRLLGSQTTTTTSRTSTS 191
                      7889*************************************************9999999999889988899999****99************* PP

           DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +a+++++++tss          lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
  OGLUM05G15720.1 192 NATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 263
                      **********999********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MVLVAPAASY HHHRAAAAAA AAAEPVFPLL GTGQCALDAD TAKSSGAAAA AGVPPGSASA  60
IHFWQSQPTT AAGAGGGSAD KKPLPMLDYG GIGGPGGSGA ATCHDCGNQA KKDCVHHRCR  120
TCCKSRGFDC PTHVRSTWVP AARRRERQQL AGAASSPPTS SAFPAATTAS AKKPRLLGSQ  180
TTTTTSRTST SNATTPRSFD TSSSHQVASF RDALPRHVRA PAVFRCVRVT SVDDGDDEFA  240
YQAAVTINGH MFRGFLYDQG ADDGRGGMAS TSNDESSHGA GAAVPSISDL HLGSASAAVP  300
PHLYSGGSGG PLILGGLGYG NTMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.15e-54SRS family protein