PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G15290.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 521aa    MW: 54475.4 Da    PI: 8.0504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G15290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.63.5e-711185194374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkf 93 
                       L +cAea++++  + a+a La +  +as dgd++qR+a  f+eA+a+ + r + ++++al ps++          e+ +a++ f +++P+l +
  OGLUM05G15290.1 118 HLRRCAEALAASRPADADAELASIARMASADGDAVQRVAVAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLHL 211
                      6889*********************************************************66666544346767778888999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + ++ N+ Ile + +++ +Hi+D++  + ++W+ Llq La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++++
  OGLUM05G15290.1 212 AAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLAQAAQVLAAESDRHGVPLDLHI-VESSV 300
                      ****************************************98867799*********....99************************9.799** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                      e+l+l++L v+++ a+++ ++lqlhrl+                           +++++s+ d++L+ +  lsP+ ++++e+ea+h  +sF +
  OGLUM05G15290.1 301 EALKLDALGVRSDHAVVIVSMLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPSFTD 394
                      **************************************************9987788888899******************************* PP

             GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllrkvks 346
                      rf++al yy  lf ++e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ ++ ++
  OGLUM05G15290.1 395 RFASALPYYEQLFAAMEEA-GAAAVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAARLPG 487
                      ****************887.7899**********************9988********************988765511445555666666654 PP

             GRAS 347 dg....yrveeesgslvlgWkdrpLvsvSaWr 374
                       g    y v e  g+l+l  +++p++ vSaWr
  OGLUM05G15290.1 488 GGderrYGVTEGGGWLILNREEKPMFCVSAWR 519
                      334566*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    
MATATAPAAV AAADNGGHGS SSASQNASGS GEGQGGSMSL SLQLRPLGST PTAAVAVSVP  60
PMAAAPMMAG PAAAAPAPAP PLATMAVAQN ASLAAVASAL AAHRRNQATH RSSALHGHLR  120
RCAEALAASR PADADAELAS IARMASADGD AVQRVAVAFA EAMARVVIRP WRGVSAALFP  180
SDAGAAGDAL TAWEAEFARQ SFLNLCPLLH LAAVAVNEII LETTRNDKFI HIVDLGGIHH  240
AHWVELLQGL ATRRAAVRPC LRLTIVHEHK HFLAQAAQVL AAESDRHGVP LDLHIVESSV  300
EALKLDALGV RSDHAVVIVS MLQLHRLVGA GILSTTAPPS PAAAAAASMI TSPLPPANMS  360
SKVDRLLRGF HLLSPRAIIL TENEANHFVP SFTDRFASAL PYYEQLFAAM EEAGAAAVER  420
KAAERYLLRE EIKDVIACDH DGPRWARHET LGRWVVRMGA AGFALAPAIT VVTAAGRVRA  480
VAARLPGGGD ERRYGVTEGG GWLILNREEK PMFCVSAWRR Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-36GRAS family protein