PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G13190.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 490aa MW: 51246.5 Da PI: 7.8203

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G13190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.5	2.8e-33	192	250	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct++gC++kkkvers d+++++i+Y+g Hnh+k OGLUM05G13190.1 192 EDGYNWRKYGQKQVKGSENPRSYYKCTYNGCSMKKKVERSLADGRITQIVYKGAHNHPK 250 8********************************************************85 PP
2	WRKY	105.7	2.3e-33	354	412	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+ OGLUM05G13190.1 354 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 412 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MASSTGGLDH GFTFTPPPFI TSFTELLSGG GGDLLGAGGE ERSPRGFSRG GARVGGGVPK 60 FKSAQPPSLP LSPPPVSPSS YFAIPPGLSP TELLDSPVLL SSSHILASPT TGAIPAQRYN 120 WKASADLIAS QQDDSRGDFS FHTNSDAMAA QPASFPSFKE QEQEQQVVES SKNGGAAASS 180 NKSGGGGNNK LEDGYNWRKY GQKQVKGSEN PRSYYKCTYN GCSMKKKVER SLADGRITQI 240 VYKGAHNHPK PLSTRRNASS SCATAAACAD DLAAPGAGAD QYSAATPENS SVTFGDDEAD 300 NASHRSEGDE PEAKRWKEDA DNEGSSGGMG GGAGGKPVRE PRLVVQTLSD IDILDDGFRW 360 RKYGQKVVKG NPNPRSYYKC TTVGCPVRKH VERASHDTRA VITTYEGKHN HDVPVGRGGG 420 GGRAPAPAPP SSGAIRPPAV AAAQQGPYTL EMLPNPAGLY GGYGAGAGGA AFPRTKDEPR 480 DDLFVESLLC

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MASSTGGLDH GFTFTPPPFI TSFTELLSGG GGDLLGAGGE ERSPRGFSRG GARVGGGVPK  60
FKSAQPPSLP LSPPPVSPSS YFAIPPGLSP TELLDSPVLL SSSHILASPT TGAIPAQRYN  120
WKASADLIAS QQDDSRGDFS FHTNSDAMAA QPASFPSFKE QEQEQQVVES SKNGGAAASS  180
NKSGGGGNNK LEDGYNWRKY GQKQVKGSEN PRSYYKCTYN GCSMKKKVER SLADGRITQI  240
VYKGAHNHPK PLSTRRNASS SCATAAACAD DLAAPGAGAD QYSAATPENS SVTFGDDEAD  300
NASHRSEGDE PEAKRWKEDA DNEGSSGGMG GGAGGKPVRE PRLVVQTLSD IDILDDGFRW  360
RKYGQKVVKG NPNPRSYYKC TTVGCPVRKH VERASHDTRA VITTYEGKHN HDVPVGRGGG  420
GGRAPAPAPP SSGAIRPPAV AAAQQGPYTL EMLPNPAGLY GGYGAGAGGA AFPRTKDEPR  480
DDLFVESLLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07100.1	2e-91	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G13190.1