PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G12430.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 327aa    MW: 34169 Da    PI: 5.1927
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G12430.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY741.9e-23117178159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg +WrKYGqKe+++s++p++Y+rCt++    C+++++v+r+++dp    +tY geH+++
  OGLUM05G12430.1 117 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQVQRCDDDPASYRVTYIGEHTCR 178
                      58***************************98878*************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MTSSMSPAPA PPYAQVMEDM EKGRELAAQL QGLLRDSPEA GRIVDQILHT FSRAMRALDK  60
AAVSAAGGEG SEVQSEVTCG GGASAGGKRK APAADRKANC RRRTQQSSGN TVVVKNLDDG  120
QAWRKYGQKE IQNSKHPKAY FRCTHKYDQL CTAQRQVQRC DDDPASYRVT YIGEHTCRDP  180
ATAPIIAAHV IHQVAAGDDD DGCGGLHAGS RLISFVAAPA APVDAAAAPT TSTITTVTAP  240
GPLLQPLKVE GGVGSSDQEE VLSSLTPGSS AVRGGGGGAG PFGPDQGDVT SSLHCSYDAD  300
AFAVAGMEFF KDDEVVFDLD DIMGLSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-26WRKY family protein