PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G11610.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 327aa MW: 36616.1 Da PI: 4.9139

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G11610.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	72.6	5.8e-23	31	128	2	96
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ++ fw + ie ++ ++h lP+ +k++++ +d m+sa++P++++k celf+ eltlr+w+ a++ +r + +dia+a+t t+ + fl OGLUM05G11610.1 31 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKDDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFL 124 7789976523377777778999************************************************************************ PP NF-YC 93 vdiv 96 ++ OGLUM05G11610.1 125 GNVL 128 9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MAIPTKEEVE HNEEDNTFSR LQLIAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDCVKN 60 VIRPKDDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES 120 YHFLGNVLHS HKALGSTAPD IDISARKHIK LDQMTSLYHP TQEMQASRLA GYPPHVPIYP 180 PIGQMGTQHT LSPFAFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG ATSIGGGSSS 240 DAAIVAQQEE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYS 300 QDVAEEDMSN ESLEGSQKDE DLFLHEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	4e-19	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G11610.1